ARI: Calculate the adjusted rand index (ARI), including 5...

In shibiaowan/SHARP: hyperfast and accurate single-cell RNA-Seq data clustering

Description

This function is to calculate the performance of the algorithm by the adjusted Rand index (ARI).

Usage

ARI(ground_true_clusters, y, ...)

Arguments

ground_true_clusters	the ground-truth clusters
y	the results after running the SHARP function
...	other parameters like randMethod which is used to specify the rand measure method chosen from the aforementioned five metrics.

Value

The clustering metric, i.e., adjusted Rand index (ARI).

Examples

y = SHARP(scExp)
finalmetrics = ARI(ground_true_clusters, y)

shibiaowan/SHARP documentation built on April 28, 2021, 1:56 p.m.