Description Usage Arguments Examples
Somtimes log-transformation can boost the clustering performance; however, it is not always the case. By this function, SHARP can automatically determine whether a log-transformation is necessary.
1 | testlog(scExp, ncells, p, sncells, n.cores)
|
scExp |
input single-cell expression matrix |
ncells |
number of cells in the expression matrix |
p |
number of reduced dimensions by random projection |
sncells |
number of cells randomly selected for checking log-transform. By default, sncells = 100 |
1 | flag = testlog(scExp)
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