Description Usage Arguments Value Examples
View source: R/get_marker_genes_unlimited.R
This is an version of finding marker genes for huge-size single-cell datasets (e.g., the size of the scRNA-seq data is so huge that the expression matrix can not be read into R; instead, a list of block-wise expression matrices is read into R.) This also corresponds to SHARP_unlimited(). Detailed specifications can be found in get_marker_genes().
1 | get_marker_genes_unlimited(scExp, y, theta, auc, pvalue, n.cores)
|
scExp |
the list of original block-wise expression matrices |
y |
the clustering results after running SHARP.R |
n.cores |
number of cores to be used. The default is (n-1) cores, where n is the number of cores in your local computer or server. |
a matrix where each row represents each selected marker gene and each column represnts one property of the gene, including its cluster, p-value and AUROC.
1 2 | y = SHARP(scExp)
sginfo = get_marker_genes_unlimited(scExp, y)
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