run_Mtimes_SHARP: Run multiple-times SHARP for single-cell RNA data clustering

In shibiaowan/SHARP: hyperfast and accurate single-cell RNA-Seq data clustering

Description

This function is to run multiple times of SHARP for evaluating SHARP in clustering of single-cell RNA-Seq data

Usage

run_Mtimes_SHARP(scExp, Mtimes = 10, Kset = 15, ...)

Arguments

scExp	input single-cell expression matrix
Mtimes	number of times to run SHARP. By default, 10 times will be tried
Kset	a set of ensemble sizes (ensize.K) to be tried. By default, only one element (i.e., ensize.K = 15) will be tried
...	other parameters of SHARP that have not been listed here

Examples

enresults = run_Mtimes_SHARP(scExp, Mtimes = 10, Kset = 5, partition.ncells = 2000, n.cores = 1)

shibiaowan/SHARP documentation built on April 28, 2021, 1:56 p.m.