get_percluster_exp: Get cluster-specific expression matrix

In shibiaowan/SHARP: hyperfast and accurate single-cell RNA-Seq data clustering

Description

This is to get the cluster-specific expresion matrix for further detecting cluster-specific marker genes, given the original scRNA-seq data (in the list format) and the clustering results.

Usage

get_percluster_exp(scExp, y, n.cores)

Arguments

scExp	the list of original block-wise expression matrices
y	the clustering results by running SHARP
n.cores	number of cores to be used. The default is (n-1) cores, where n is the number of cores in your local computer or server.

Value

a list of sparse matrices where each matrix corresponds to the expression matrix of each cluster

Examples

y = SHARP_unlimited(scExp)
smat = get_percluster_exp(scExp, y)

shibiaowan/SHARP documentation built on April 28, 2021, 1:56 p.m.