AlignObj-class: An S4 object for class AlignObj
In shubham1637/DIAlignR: Dynamic Programming Based Alignment of MS2 Chromatograms
AlignObj-class R Documentation
An S4 object for class AlignObj
Description
s is a point-wise similarity matrix between signalA and signalB.
Intermediate matrices M is calculated from s for alignment. Each cell of the Traceback
matrix has coordinate of its parent cell. path matrix is a binary matrix with ones indicating path
of maximum cumulative score.
GapOpen and GapExten are gap-opening and gap-extension penalties used by alignment algorithm. They
must be the same. indexA_aligned and indexB_aligned are aligned indices of signalA and SignalB.
The cumulative alignment score is in score vector.
Author(s)
Shubham Gupta, shubh.gupta@mail.utoronto.ca
ORCID: 0000-0003-3500-8152
License: (c) Author (2019) + GPL-3
Date: 2019-12-14
See Also
doAlignmentCpp
shubham1637/DIAlignR documentation built on March 29, 2023, 8:45 p.m.
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| AlignObj-class | R Documentation |
An S4 object for class AlignObj
Description
s is a point-wise similarity matrix between signalA and signalB. Intermediate matrices M is calculated from s for alignment. Each cell of the Traceback matrix has coordinate of its parent cell. path matrix is a binary matrix with ones indicating path of maximum cumulative score. GapOpen and GapExten are gap-opening and gap-extension penalties used by alignment algorithm. They must be the same. indexA_aligned and indexB_aligned are aligned indices of signalA and SignalB. The cumulative alignment score is in score vector.
Author(s)
Shubham Gupta, shubh.gupta@mail.utoronto.ca
ORCID: 0000-0003-3500-8152
License: (c) Author (2019) + GPL-3 Date: 2019-12-14
See Also
doAlignmentCpp
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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