Man pages for shubham1637/DIAlignR
Dynamic programming based alignment of MS2 chromatograms

AffineAlignObj-classAn S4 object for class Person
AlignObj-classAn S4 object for class Person
calcNoBeefMaskGlobalHard constraining of similarity matrix outside of global fit...
calcNoBeefMaskGlobalWSlopeSoft constraining of similarity matrix outside of global fit...
constrainSimilarityHard constraining of similarity matrix outside of global fit...
DIAlignRDIAlignR
doAffineAlignment_S4Initialize a S4 object AffineAlignObj
doAlignment_S4Initialize a S4 object AffineAlignObj1
getAffineAlignObjCreates affine alignment object
getAlignmentComputes indices of row and column of maximum scored...
getAlignmentPathOutput matrix with alignment path represented as binary-hot...
getGapPenaltyCalculates gap penalty
getLinearfitcalculates linear fit between RT of two runs
getLOESSfitcalculates LOESS fit between RT of two runs
getseqSimMatCalculate similarity matrix for two sequences
getSimilarityMatrixcalculates similarity matrix between two chromatogram groups
initializeMatrixInitialize a similarity matrix
mapIdxToTimeEstablishes mapping back from index to time
NeedleObjAffine-classAn S4 object to group matrices produced by the alignmnet
Person-classAn S4 object for class Person
rcpp_s4Initialize a similarity matrix
setAffineAlignObj_S4Initialize a S4 object AffineAlignObj1
setAlignObj_S4Initialize a S4 object AffineAlignObj1
shubham1637/DIAlignR documentation built on April 12, 2019, 12:40 a.m.