getPrecursorsQuery: Get precursor Info
In shubham1637/DIAlignR: Dynamic Programming Based Alignment of MS2 Chromatograms
View source: R/get_osw_query.R
getPrecursorsQuery R Documentation
Get precursor Info
Description
For each precursor in the table respective transition ids are fetched.
Order of transition is kept same as the order of their intensities in getTransitionsQuery.
Usage
getPrecursorsQuery(runType = "DIA_Proteomics", level = "Peptide")
Arguments
runType
(string) This must be one of the strings "DIA_Proteomics", "DIA_IPF", "DIA_Metabolomics".
level
(string) Apply maxPeptideFDR on Protein as well if specified as "Protein". Default: "Peptide".
Value
SQL query to be searched.
Author(s)
Shubham Gupta, shubh.gupta@mail.utoronto.ca
ORCID: 0000-0003-3500-8152
License: (c) Author (2019) + GPL-3
Date: 2020-04-04
See Also
fetchPrecursorsInfo
shubham1637/DIAlignR documentation built on March 29, 2023, 8:45 p.m.
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View source: R/get_osw_query.R
| getPrecursorsQuery | R Documentation |
Get precursor Info
Description
For each precursor in the table respective transition ids are fetched.
Order of transition is kept same as the order of their intensities in getTransitionsQuery.
Usage
getPrecursorsQuery(runType = "DIA_Proteomics", level = "Peptide")
Arguments
runType |
(string) This must be one of the strings "DIA_Proteomics", "DIA_IPF", "DIA_Metabolomics". |
level |
(string) Apply maxPeptideFDR on Protein as well if specified as "Protein". Default: "Peptide". |
Value
SQL query to be searched.
Author(s)
Shubham Gupta, shubh.gupta@mail.utoronto.ca
ORCID: 0000-0003-3500-8152
License: (c) Author (2019) + GPL-3 Date: 2020-04-04
See Also
fetchPrecursorsInfo
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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