getAnalytesQuery: Generate SQL query to fetch limited information from osw...

In shubham1637/DIAlignR: Dynamic Programming Based Alignment of MS2 Chromatograms

Generate SQL query to fetch limited information from osw files.

Description

Generate SQL query to fetch limited information from osw files.

Usage

getAnalytesQuery(
  maxFdrQuery,
  oswMerged = TRUE,
  filename = NULL,
  runType = "DIA_Proteomics",
  analyteInGroupLabel = FALSE
)

Arguments

maxFdrQuery	(numeric) value between 0 and 1. It is used to filter features from osw file which have SCORE_MS2.QVALUE less than itself.
oswMerged	(logical) TRUE for experiment-wide FDR and FALSE for run-specific FDR by pyprophet.
filename	(string) as mentioned in RUN table of osw files..
runType	(char) This must be one of the strings "DIA_Proteomics", "DIA_Metabolomics".
analyteInGroupLabel	(logical) TRUE for getting analytes as PRECURSOR.GROUP_LABEL from osw file.

Value

SQL query to be searched.

Author(s)

Shubham Gupta, [e-mail]

ORCID: 0000-0003-3500-8152

License: (c) Author (2019) + GPL-3 Date: 2019-12-14

See Also

getOswAnalytes

shubham1637/DIAlignR documentation built on March 29, 2023, 8:45 p.m.