API for sigven/oncoEnrichR
Cancer-dedicated gene set interpretation
| Global functions | |
|---|---|
| add_excel_sheet | Source code |
| annotate_ligand_receptor_interactions | Source code |
| annotate_protein_complex | Source code |
| annotate_protein_domain | Source code |
| annotate_subcellular_compartments | Source code |
| annotate_synleth_paralog_pairs | Source code |
| annotate_tf_targets | Source code |
| cancer_association_rank | Man page Source code |
| cp_output_cols | Man page |
| file_is_writable | Source code |
| get_biogrid_network_nodes_edges | Source code |
| get_fitness_lof_scores | Source code |
| get_genes_unknown_function | Source code |
| get_go_enrichment | Source code |
| get_lower_tri | Source code |
| get_network_communities | Source code |
| get_network_hubs | Source code |
| get_ppi_network | Source code |
| get_string_network_nodes_edges | Source code |
| get_target_priority_scores | Source code |
| get_universal_enrichment | Source code |
| get_upper_tri | Source code |
| hpa_prognostic_genes | Source code |
| init_report | Man page Source code |
| km_cshl_survival_genes | Source code |
| load_db | Man page Source code |
| onco_enrich | Man page Source code |
| retrieve_tf_target_network | Source code |
| target_disease_associations | Source code |
| target_drug_associations | Source code |
| tcga_aberration_matrix | Source code |
| tcga_aberration_table | Source code |
| tcga_coexpression | Source code |
| tcga_oncoplot_genes | Source code |
| tidyeval | Man page |
| tissue_colors | Man page |
| validate_db | Man page Source code |
| validate_db_df | Man page Source code |
| validate_query_genes | Source code |
| write | Man page Source code |
