README.md
In sigven/oncoEnrichR: Cancer-dedicated gene set interpretation
oncoEnrichR 
oncoEnrichR is an R package for functional interrogation of human gene lists in the context of cancer. The package leverages an extensive amount of prior molecular knowledge that allows for biological interpretation along multiple dimensions, both at the systems level and at the level of individual genes.
Web-based access to oncoEnrichR is available at https://oncotools.elixir.no
oncoEnrichR is primarily intended for exploratory analysis and prioritization of a gene list (referred to here as query set) from high-throughput cancer biology experiments, e.g. CRISPR screens, protein proximity labeling, or gene expression profiling. The tool queries a number of high-quality data resources in order to assemble cancer-relevant annotations and analyses in an interactive report.
Getting started
- What types of questions can be answered by oncoEnrichR?
- Output views from oncoEnrichR
- Installation instructions
- Running instructions
- Annotation resources available in oncoEnrichR
News
- February 27th 2025: 1.5.3 release
- September 9th 2024: 1.5.2 release
- August 3rd 2024: 1.5.1 release
- August 16th 2023: 1.4.2 release
Example report
Citation
If you use oncoEnrichR, please cite the following publication:
Sigve Nakken, Sveinung Gundersen, Fabian L. M. Bernal, Dimitris Polychronopoulos, Eivind Hovig, and Jørgen Wesche. Comprehensive interrogation of gene lists from genome-scale cancer screens with oncoEnrichR (2023). Int J Cancer. doi:10.1002/ijc.34666
Contact
sigven AT ifi.uio.no
Funding and Collaboration
oncoEnrichR is supported by the Centre for Cancer Cell Reprogramming at the University of Oslo/Oslo University Hospital, and Elixir Norway (Oslo node).
sigven/oncoEnrichR documentation built on March 5, 2025, 7:49 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
oncoEnrichR
oncoEnrichR is an R package for functional interrogation of human gene lists in the context of cancer. The package leverages an extensive amount of prior molecular knowledge that allows for biological interpretation along multiple dimensions, both at the systems level and at the level of individual genes.
Web-based access to oncoEnrichR is available at https://oncotools.elixir.no
oncoEnrichR is primarily intended for exploratory analysis and prioritization of a gene list (referred to here as query set) from high-throughput cancer biology experiments, e.g. CRISPR screens, protein proximity labeling, or gene expression profiling. The tool queries a number of high-quality data resources in order to assemble cancer-relevant annotations and analyses in an interactive report.
Getting started
- What types of questions can be answered by oncoEnrichR?
- Output views from oncoEnrichR
- Installation instructions
- Running instructions
- Annotation resources available in oncoEnrichR
News
- February 27th 2025: 1.5.3 release
- September 9th 2024: 1.5.2 release
- August 3rd 2024: 1.5.1 release
- August 16th 2023: 1.4.2 release
Example report
Citation
If you use oncoEnrichR, please cite the following publication:
Sigve Nakken, Sveinung Gundersen, Fabian L. M. Bernal, Dimitris Polychronopoulos, Eivind Hovig, and Jørgen Wesche. Comprehensive interrogation of gene lists from genome-scale cancer screens with oncoEnrichR (2023). Int J Cancer. doi:10.1002/ijc.34666
Contact
sigven AT ifi.uio.no
Funding and Collaboration
oncoEnrichR is supported by the Centre for Cancer Cell Reprogramming at the University of Oslo/Oslo University Hospital, and Elixir Norway (Oslo node).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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