Files in sigven/oncoEnrichR

Cancer-dedicated gene set interpretation

.Rbuildignore

.Rinstignore

.bumpversion.cfg

.github/CODE_OF_CONDUCT.md .github/ISSUE_TEMPLATE/oncoenrichr-bug-report.md .github/ISSUE_TEMPLATE/oncoenrichr-feature-request.md

.github/workflows/pkgdown.yaml

DESCRIPTION

LICENSE

NAMESPACE

R/cell_tissue.R R/disease_drug.R R/enrich.R R/gene_fitness.R R/ligand_receptor.R R/onco_enrichr.R R/ppi.R R/prognostic.R R/protein_complex.R R/subcell.R R/synthetic_lethality.R

R/sysdata.rda

R/tcga.R R/tf_targets.R R/unknown_function.R R/utils.R README.md data_processing_code/README.md

data_processing_code/RELEASE_NOTES.txt

data_processing_code/data_raw.R data_processing_code/data_utility_functions.R

docker/Dockerfile

docker/buildDocker.sh

docker/oncoenrichr_wrapper.xml

docker/renv.lock

inst/CITATION

inst/bibliography.bib

inst/extdata/myc_data.csv

inst/templates/_aberration.Rmd inst/templates/_cancer_association.Rmd inst/templates/_cancer_hallmark_association.Rmd inst/templates/_cell_tissue.Rmd inst/templates/_coexpression.Rmd inst/templates/_disclaimer.md inst/templates/_documentation_workflow.Rmd inst/templates/_drug_target_association.Rmd inst/templates/_fitness_lof.Rmd inst/templates/_functional_enrichment.Rmd inst/templates/_functional_enrichment_invalid.Rmd

inst/templates/_header.html

inst/templates/_ligand_receptor.Rmd inst/templates/_ppi.Rmd inst/templates/_prognosis_survival.Rmd inst/templates/_project_background.Rmd inst/templates/_protein_complex.Rmd inst/templates/_protein_domain.Rmd inst/templates/_query_verification.Rmd inst/templates/_regulatory_interactions.Rmd

inst/templates/_site.yml

inst/templates/_subcell_comp.Rmd inst/templates/_synthetic_lethality.Rmd inst/templates/_unknown_function.Rmd inst/templates/index.Rmd

man/figures/can-cell.png

man/figures/elixir_norway.png

man/figures/logo.png

man/figures/oncoenrichr_overview.png

man/figures/oncoenrichr_slideshow.gif

man/gseabase.Rd man/init_report.Rd man/load_db.Rd man/onco_enrich.Rd man/tidyeval.Rd man/validate_db.Rd man/validate_db_df.Rd man/write.Rd

oncoEnrichR.Rproj

pkgdown/.DS_Store

pkgdown/_pkgdown.yml

pkgdown/assets/.DS_Store

pkgdown/assets/img/can-cell.png

pkgdown/assets/img/elixir_norway.png

pkgdown/assets/img/oncoenrichr_overview.png

pkgdown/assets/img/oncoenrichr_overview2.png

pkgdown/assets/img/oncoenrichr_slideshow2.gif

pkgdown/favicon/apple-touch-icon-120x120.png

pkgdown/favicon/apple-touch-icon-152x152.png

pkgdown/favicon/apple-touch-icon-180x180.png

pkgdown/favicon/apple-touch-icon-60x60.png

pkgdown/favicon/apple-touch-icon-76x76.png

pkgdown/favicon/apple-touch-icon.png

pkgdown/favicon/favicon-16x16.png

pkgdown/favicon/favicon-32x32.png

pkgdown/favicon/favicon.ico

pkgdown/index.md

renv.lock

tests/testthat.R tests/testthat/test_celltissue.R tests/testthat/test_complex.R tests/testthat/test_disease_drug.R tests/testthat/test_enrich.R tests/testthat/test_fitness.R tests/testthat/test_ligandreceptor.R tests/testthat/test_oncoenrichr.R tests/testthat/test_ppi.R tests/testthat/test_prognostic_assocs.R tests/testthat/test_subcell.R tests/testthat/test_tcga.R tests/testthat/test_tf_target.R tests/testthat/test_utils.R vignettes/CHANGELOG.Rmd vignettes/annotation_resources.Rmd vignettes/cancer_gene_rank.Rmd vignettes/input.Rmd vignettes/installation.Rmd

vignettes/module_screenshots/.DS_Store

vignettes/module_screenshots/aberration_I.jpg

vignettes/module_screenshots/aberration_II.jpg

vignettes/module_screenshots/aberration_III.jpg

vignettes/module_screenshots/aberration_IV.jpg

vignettes/module_screenshots/cancer_association_I.jpg

vignettes/module_screenshots/cancer_association_II.jpg

vignettes/module_screenshots/cancer_hallmarks.jpg

vignettes/module_screenshots/cell_tissue_I.jpg

vignettes/module_screenshots/cell_tissue_II.jpg

vignettes/module_screenshots/drug_I.jpg

vignettes/module_screenshots/drug_II.jpg

vignettes/module_screenshots/enrichment_I.jpg

vignettes/module_screenshots/enrichment_II.jpg

vignettes/module_screenshots/excel.jpg

vignettes/module_screenshots/fitness_I.jpg

vignettes/module_screenshots/fitness_II.jpg

vignettes/module_screenshots/oncoEnrichR_SuppFigure1.png

vignettes/module_screenshots/ppi_I.jpg

vignettes/module_screenshots/ppi_II.jpg

vignettes/module_screenshots/prognostic_I.jpg

vignettes/module_screenshots/prognostic_II.jpg

vignettes/module_screenshots/protein_complex.jpg

vignettes/module_screenshots/protein_domains.jpg

vignettes/module_screenshots/query_verification.jpg

vignettes/module_screenshots/regulatory_I.jpg

vignettes/module_screenshots/regulatory_II.jpg

vignettes/module_screenshots/subcell_I.jpg

vignettes/module_screenshots/subcell_II.jpg

vignettes/module_screenshots/synthetic_lethality.jpg

vignettes/module_screenshots/tumor_coexpression.jpg

vignettes/module_screenshots/unknown_function.jpg

vignettes/output.Rmd vignettes/running.Rmd

sigven/oncoEnrichR documentation built on Aug. 31, 2023, 8:05 a.m.