write: Write oncoEnrichR report object to output file

In sigven/oncoEnrichR: Cancer-dedicated gene set interpretation

Write oncoEnrichR report object to output file

Description

Function that writes an oncoEnrichR report object to file, either as an interactive HTML report or as an Excel workbook.

Usage

write(
  report,
  oeDB,
  file = "testReport.html",
  ignore_file_extension = F,
  overwrite = F,
  format = "html",
  ...
)

Arguments

report	object with oncoEnrichR report data (returned by oeDB$onco_enrich)
oeDB	oncoEnrichR data repository object - as returned from load_db()
file	full filename for report output (e.g. "oe_report.html" or "oe_report.xlsx")
ignore_file_extension	logical to accept any type of filaname extensions (for Galaxy integration)
overwrite	logical indicating if existing output files may be overwritten
format	file format of output (html/excel)
...	options for Galaxy/non self-contained HTML. Only applicable for use in Galaxy

sigven/oncoEnrichR documentation built on Aug. 31, 2023, 8:05 a.m.