In sigven/oncoEnrichR: Cancer-dedicated gene set interpretation

Protein domains {.tabset}

• Here we show the most frequent protein domains (PFAM) that occur within members of the query set
• Only domains occurring in more than one query target protein are shown in the table below

htmltools::br()

domains_recurrent <- onc_enrich_report[['data']][['protein_domain']][['target']] |>
  dplyr::filter(stringr::str_detect(
    .data$target_genes, ","
  ))

DT::datatable(domains_recurrent, 
              escape = F, 
              extensions=c("Buttons","Responsive"), 
              width = "100%",
              style = 'bootstrap',
              rownames = F,
              options=list(buttons = c('csv','excel'),
                           pageLength = 10,
                           bPaginate = T,
                           dom = 'Bfrtip') 
)

cat('<br><br>\n <ul><li>  <i> <span style="font-size: 105%; padding: 3px; background-color:#989898; color:white">&nbsp;&nbsp;<b>NO GENES</b> in the query set are annotated with common protein domains found in the PFAM database. &nbsp;&nbsp; </span></i></li></ul>',sep='\n')
cat('\n')
cat('<br><br>')

sigven/oncoEnrichR documentation built on Aug. 31, 2023, 8:05 a.m.