basic_summaries: Basic summaries of a cross2 object

In simecek/qtl2: Tools for analyzing high-dimensional QTL experiments

Description

Basic summaries of a cross2 object.

Usage

n_ind(cross2)

ind_ids(cross2)

n_lines(cross2)

line_ids(cross2)

n_chr(cross2)

chr_names(cross2)

tot_mar(cross2)

n_mar(cross2)

marker_names(cross2)

n_pheno(cross2)

pheno_names(cross2)

n_covar(cross2)

covar_names(cross2)

n_phenocovar(cross2)

phenocovar_names(cross2)

Arguments

cross2

An object of class "cross2". For details, see the R/qtl2 developer guide.

Functions

• n_ind: Number of phenotyped individuals

• ind_ids: IDs of phenotyped individuals

• n_lines: Number of genotyped lines

• line_ids: IDs of genotyped lines

• n_chr: Number of chromosomes

• chr_names: Chromosome names

• tot_mar: Total number of markers

• n_mar: Number of markers on each chromosome

• marker_names: Marker names

• n_pheno: Number of phenotypes

• pheno_names: Phenotype names

• n_covar: Number of covariates

• covar_names: Covariate names

• n_phenocovar: Number of phenotype covariates

• phenocovar_names: Phenotype covariate names

See Also

summary.cross2

simecek/qtl2 documentation built on May 29, 2019, 10:01 p.m.