probs_to_grid: Subset genotype probability array to pseudomarkers on a grid
In simecek/qtl2: Tools for analyzing high-dimensional QTL experiments
Description
Usage
Arguments
Value
Examples
Description
Subset genotype probability array (from calc_genoprob
to a grid of pseudomarkers along each chromosome.
Usage
1
probs_to_grid(probs)
Arguments
probs
List of 3d arrays, as output from
calc_genoprob with stepwidth="fixed".
Value
Same list as input, but subset to just include
pseudomarkers along a grid.
Examples
1
2
3
4
5
grav2 <- read_cross2(system.file("extdata", "grav2.zip", package="qtl2"))
probs <- calc_genoprob(grav2, step=1, error_prob=0.002)
sapply(probs, dim)
probs_sub <- probs_to_grid(probs)
sapply(probs_sub, dim)
simecek/qtl2 documentation built on May 29, 2019, 10:01 p.m.
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Description Usage Arguments Value Examples
Description
Subset genotype probability array (from calc_genoprob
to a grid of pseudomarkers along each chromosome.
Usage
1 | probs_to_grid(probs)
|
Arguments
probs |
List of 3d arrays, as output from
|
Value
Same list as input, but subset to just include pseudomarkers along a grid.
Examples
1 2 3 4 5 | grav2 <- read_cross2(system.file("extdata", "grav2.zip", package="qtl2"))
probs <- calc_genoprob(grav2, step=1, error_prob=0.002)
sapply(probs, dim)
probs_sub <- probs_to_grid(probs)
sapply(probs_sub, dim)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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