genoprob_to_alleleprob: Convert genotype probabilities to allele probabilities

Description Usage Arguments Value Examples

Description

Reduce genotype probabilities (as calculated by calc_genoprob) to allele probabilities.

Usage

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genoprob_to_alleleprob(probs, quiet = TRUE, n_cores = 1)

Arguments

probs

List of three-dimensional arrays of probabilities, as calculated from calc_genoprob.

quiet

IF FALSE, print progress messages.

n_cores

Number of CPU cores to use, for parallel calculations. (If 0, use detectCores.)

Value

List of three-dimensional arrays of probabilities, regarding alleles rather than genotypes.

Examples

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iron <- read_cross2(system.file("extdata", "iron.zip", package="qtl2"))
probs <- calc_genoprob(iron, step=1, error_prob=0.002)
allele_probs <- genoprob_to_alleleprob(probs)

simecek/qtl2 documentation built on May 29, 2019, 10:01 p.m.