Files in simecek/qtl2

Tools for analyzing high-dimensional QTL experiments

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

License.md

Makefile

NAMESPACE

R/RcppExports.R R/calc_genetic_sim.R R/calc_genoprob.R R/check_cross.R R/convert2cross2.R R/est_map.R R/genoprob_to_alleleprob.R R/insert_pseudomarkers.R R/map_functions.R R/probs_to_grid.R R/read_cross2.R R/summary.cross2.R R/write_control_file.R R/zip_datafiles.R R/zzz.R ReadMe.md inst/License.md inst/ReadMe.md inst/ToDo.md inst/extdata/ReadMe.md

inst/extdata/grav2.zip

inst/extdata/iron.zip

man/basic_summaries.Rd man/calc_genetic_sim.Rd man/calc_genoprob.Rd man/check_cross2.Rd man/convert2cross2.Rd man/est_map.Rd man/genoprob_to_alleleprob.Rd man/insert_pseudomarkers.Rd man/print.cross2.Rd man/probs_to_grid.Rd man/read_cross2.Rd man/summary.cross2.Rd man/write_control_file.Rd man/zip_datafiles.Rd

src/Makevars

src/RcppExports.cpp

src/calc_genetic_sim.cpp

src/check_cross.cpp

src/check_cross.h

src/cross.cpp

src/cross.h

src/cross_bc.cpp

src/cross_bc.h

src/cross_dh.h

src/cross_f2.cpp

src/cross_f2.h

src/cross_f2pk.cpp

src/cross_f2pk.h

src/cross_haploid.h

src/cross_riself.cpp

src/cross_riself.h

src/cross_risib.cpp

src/cross_risib.h

src/debug_util.cpp

src/debug_util.h

src/genoprob_to_alleleprob.cpp

src/genoprob_to_alleleprob.h

src/hmm_calcgenoprob.cpp

src/hmm_calcgenoprob.h

src/hmm_estmap.cpp

src/hmm_estmap.h

src/hmm_forwback.cpp

src/hmm_forwback.h

src/hmm_util.cpp

src/hmm_util.h

src/interpolate_maps.cpp

src/interpolate_maps.h

src/linreg_eigen.cpp

src/linreg_eigen.h

src/linreg_lapack.cpp

src/linreg_lapack.h

src/matrix.cpp

src/matrix.h

src/r_message.cpp

src/r_message.h

src/random.cpp

src/random.h

src/test_hmm.cpp

src/test_hmm.h

tests/testthat.R tests/testthat/test-addlog.R tests/testthat/test-basic_summaries.R tests/testthat/test-calc_genetic_sim.R tests/testthat/test-calcgenoprob.R tests/testthat/test-check_cross.R tests/testthat/test-convert2cross2.R tests/testthat/test-convert_sexcodes.R tests/testthat/test-crossinfo_sex.R tests/testthat/test-estmap.R tests/testthat/test-genoprob_to_alleleprob.R tests/testthat/test-hmmbasic-bc.R tests/testthat/test-hmmbasic-dh.R tests/testthat/test-hmmbasic-f2.R tests/testthat/test-hmmbasic-f2pk.R tests/testthat/test-hmmbasic-haploid.R tests/testthat/test-hmmbasic-riself.R tests/testthat/test-hmmbasic-risib.R tests/testthat/test-interpmap.R tests/testthat/test-io.R tests/testthat/test-linreg.R tests/testthat/test-mapfunc.R tests/testthat/test-matrix.R tests/testthat/test-probs_to_grid.R tests/testthat/test-pseudomarkermap.R tests/testthat/test-random.R tests/testthat/test-yaml.R vignettes/developer_guide.Rmd vignettes/input_files.Rmd vignettes/user_guide.Rmd

simecek/qtl2 documentation built on May 29, 2019, 10:01 p.m.