inst/ToDo.md
In simecek/qtl2: Tools for analyzing high-dimensional QTL experiments
ToDo list for qtl2
- read data (in "tidy" CSV format)
- control file
- genotypes
- phenotypes
- phenotype covariates
- founder genotypes
- genetic map
-
physical map
-
data structure within R?
-
Implement HMM:
- AIL
- CC/MAGIC
-
DO/HS
-
scanone, scanone with covariates
-
logistic regression by IRLS
-
fit of mixed effects models
-
Developer guide describing the basic design, particularly regarding
data structures
simecek/qtl2 documentation built on May 29, 2019, 10:01 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
ToDo list for qtl2
- read data (in "tidy" CSV format)
- control file
- genotypes
- phenotypes
- phenotype covariates
- founder genotypes
- genetic map
-
physical map
-
data structure within R?
-
Implement HMM:
- AIL
- CC/MAGIC
-
DO/HS
-
scanone, scanone with covariates
-
logistic regression by IRLS
-
fit of mixed effects models
-
Developer guide describing the basic design, particularly regarding data structures
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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