upload_comments: Upload Comments

In simon-hans/CEDARS: Simple and Efficient Pipeline for Electronic Health Record Annotation

Upload Comments

Description

Uploads patient comments for patients already in the patient list. Useful when some comments have already been documented before running CEDARS. Only comments for existing records are altered, missing patient records are not added!

Usage

upload_comments(
  uri_fun,
  user,
  password,
  host,
  replica_set,
  port,
  database,
  patient_ids,
  comments
)

Arguments

uri_fun	Uniform resource identifier (URI) string generating function for MongoDB credentials.
user	MongoDB user name.
password	MongoDB user password.
host	MongoDB host server.
replica_set	MongoDB replica set, if indicated.
port	MongoDB port.
database	MongoDB database name.
patient_ids	Vector of patient ID's.
comments	Vector of patient comments.

Value

Objects of class character, reporting on completed event uploads.

Examples

## Not run: 
upload_comments(uri_fun = mongo_uri_standard, user = 'John', password = 'db_password_1234',
host = 'server1234', port = NA, database = 'TEST_PROJECT', patient_ids = ids,
comments = comment_text)

## End(Not run)

simon-hans/CEDARS documentation built on Feb. 14, 2024, 3:16 a.m.