upload_events: Upload Event Data

In simon-hans/CEDARS: Simple and Efficient Pipeline for Electronic Health Record Annotation

Upload Event Data

Description

Uploads event dates for patients already in the patient list. Useful when some events have already been documented before running CEDARS, for example as a second-line method to catch events missed with a different approach. Only event dates for existing records are altered, missing patient records are not added!

Usage

upload_events(
  uri_fun,
  user,
  password,
  host,
  replica_set,
  port,
  database,
  patient_ids,
  event_dates
)

Arguments

uri_fun	Uniform resource identifier (URI) string generating function for MongoDB credentials.
user	MongoDB user name.
password	MongoDB user password.
host	MongoDB host server.
replica_set	MongoDB replica set, if indicated.
port	MongoDB port.
database	MongoDB database name.
patient_ids	Vector of patient ID's.
event_dates	Vector of clinical event dates.

Value

Objects of class character, reporting on completed event uploads.

Examples

## Not run: 
upload_events(uri_fun = mongo_uri_standard, user = 'John', password = 'db_password_1234',
host = 'server1234', port = NA, database = 'TEST_PROJECT', patient_ids = ids, event_dates = events)

## End(Not run)

simon-hans/CEDARS documentation built on Feb. 14, 2024, 3:16 a.m.