image.statMap: View statMap and pbj results in a statMap object

In simonvandekar/pbj: Parametric Bootstrap Joint Testing Procedures for Neuroimaging

View statMap and pbj results in a statMap object

Description

Uses a statMap with inferences results to visualize CEI, CMI, or maxima

Usage

## S3 method for class 'statMap'
image(
  x,
  method = c("CEI", "maxima", "CMI"),
  cft_s = NULL,
  cft_p = NULL,
  cft_chisq = NULL,
  roi = NULL,
  index = NULL,
  alpha = NULL,
  clusterMask = TRUE,
  clusterID = TRUE,
  title = "",
  plane = c("axial", "sagittal", "coronal"),
  crop = TRUE,
  lo = TRUE,
  ...
)

Arguments

x	the statMap that created the pbj object.
method	Which inference method to visualize.
cft_s	The cluster forming threshold or threshold for visualizing results on the RESI effect size scale.
cft_p	The cluster forming threshold or threshold for visualizing results on the p-value scale.
cft_chisq	The cluster forming threshold or threshold for visualizing results on the chi-squared scale.
roi	Which ROI index to visualize.
index	Which slices to visualize. Default is all slices
alpha	Adjusted p-value threshold to display clusters.
clusterMask	logical indicating whether to mask the results with significant clusters.
clusterID	logical indicating whether to include the clusterID in the figure.
title	Character passed to image.niftiImage
plane	Which anatomical plane to visualize.
crop	Whether to crop white space from image. Defaults to TRUE.
lo	Whether to perform layout call to arrange images. Defaults to true.
...	Arguments passed to par.

simonvandekar/pbj documentation built on Nov. 3, 2023, 9:33 a.m.