palm: this is an R wrapper function for PALM it has limited...

In simonvandekar/pbj: Parametric Bootstrap Joint Testing Procedures for Neuroimaging

this is an R wrapper function for PALM it has limited functionality for the features that PALM offers

Description

this is an R wrapper function for PALM it has limited functionality for the features that PALM offers

Usage

palm(
  i,
  m,
  s = NULL,
  d,
  o,
  C = NULL,
  Cstat = "extent",
  tc = NULL,
  f = NULL,
  fonly = TRUE,
  n = 10000,
  eb = NULL,
  within = NULL,
  whole = NULL,
  ee = TRUE,
  T = FALSE,
  noniiclass = TRUE,
  logp = TRUE
)

Arguments

i	vector of strings pointing to input images or a single 4d nifti string.
m	mask file.
s	vector of strings pointing to input surfaces or a single 4d surface.
d	design matrix as a data frame or csv file.
o	output directory and prefix.
C	cluster forming threshold as a Z-value
Cstat	cluster statistic
tc	T-contrast matrix that randomise takes as matrix, data frame, or csv.
f	F-contrast matrix that randomise takes, as matrix data frame, or csv.
fonly	only run the F-tests.
n	number of permutations to run.
eb	exchangeability blocks (not functional).
within	not functional.
whole	not functional.
ee	exchangeable errors assumed.
T	Run TFCE.
noniiclass	Allow gzipped niftis.
logp	Compute log10p-values.

Value

Returns a string of the command that was evaluated.

simonvandekar/pbj documentation built on Nov. 3, 2023, 9:33 a.m.