Man pages for sjdlabgroup/metaITH
A Tool for Analyzing Intratumor Heterogeneity at Multiple Levels
| anti_pd1_favor_signature | Runs an anti-PD1 favor signature analysis |
| apoptosis_signature | Runs an apoptosis signature analysis |
| dna_dendrograms | Creates DNA dendrogram |
| drug_resistance_signature | Runs a drug-resistance signature analysis |
| emt_signature | Runs an emt signature analysis |
| hypoxia_signature | Runs a hypoxia signature analysis |
| immune_dendrograms | Creates Immune dendrogram |
| metaITH_analysis | Runs a comprehensive intratumor heterogeneity analysis |
| multi_level_divergence_diversity | Performs a multi-level divergence and diversity analysis |
| proliferation_signature | Runs a proliferation signature analysis |
| rna_dendrograms | Creates RNA dendrogram |
| signature_analysis | Runs a signature analysis on an RNA expression matrix |
| snv_heatmaps | Outputs a heatmap of variant allele frequency. |
| specified_geneset_signature | Runs a signature analysis using a user-supplied geneset |
| z_score_calculations | Generates a matrix containing z-scores |
