immune_dendrograms: Creates Immune dendrogram
In sjdlabgroup/metaITH: A Tool for Analyzing Intratumor Heterogeneity at Multiple Levels
View source: R/other_functions.R
Description
Takes in a text file containing list of sample files.
Creates an immune distance matrix, containing the distance between all the tumor regions and normal, an immune tree topology file, and an unrooted phylogram.
Usage
1
immune_dendrograms(immune_dendro_list_file)
Arguments
immune_dendro_list_file
A text file containing a list of sample files, one file name per line. Each file contains a matrix with proportion of immune cells (inferred by CIBERSORT) of all immune cell types in each tumor region and normal.
sjdlabgroup/metaITH documentation built on Nov. 5, 2019, 8:58 a.m.
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View source: R/other_functions.R
Description
Takes in a text file containing list of sample files. Creates an immune distance matrix, containing the distance between all the tumor regions and normal, an immune tree topology file, and an unrooted phylogram.
Usage
1 | immune_dendrograms(immune_dendro_list_file)
|
Arguments
immune_dendro_list_file |
A text file containing a list of sample files, one file name per line. Each file contains a matrix with proportion of immune cells (inferred by CIBERSORT) of all immune cell types in each tumor region and normal. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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