dna_dendrograms: Creates DNA dendrogram
In sjdlabgroup/metaITH: A Tool for Analyzing Intratumor Heterogeneity at Multiple Levels
View source: R/other_functions.R
Description
Takes in a text file containing list of sample files. Each file contains a matrix with variant allele frequency of all the variations in each tumor region and normal.
Creates a DNA distance matrix, containing the distance between all the tumor regions and normal, a DNA tree topology file, and an unrooted DNA dendrogram.
Usage
1
dna_dendrograms(dna_dendro_list_file)
Arguments
dna_dendro_list_file
A text file containing a list of sample files, one file name per line. Each file contains a matrix with variant allele frequency of all the variations in each tumor region and normal.
sjdlabgroup/metaITH documentation built on Nov. 5, 2019, 8:58 a.m.
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View source: R/other_functions.R
Description
Takes in a text file containing list of sample files. Each file contains a matrix with variant allele frequency of all the variations in each tumor region and normal. Creates a DNA distance matrix, containing the distance between all the tumor regions and normal, a DNA tree topology file, and an unrooted DNA dendrogram.
Usage
1 | dna_dendrograms(dna_dendro_list_file)
|
Arguments
dna_dendro_list_file |
A text file containing a list of sample files, one file name per line. Each file contains a matrix with variant allele frequency of all the variations in each tumor region and normal. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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