rna_dendrograms: Creates RNA dendrogram
In sjdlabgroup/metaITH: A Tool for Analyzing Intratumor Heterogeneity at Multiple Levels
View source: R/other_functions.R
Description
Takes in a text file containing list of sample files.
Creates a RNA distance matrix, containing the distance between all the tumor regions and normal, a RNA tree topology file, and a RNA unrooted dendrogram.
Usage
1
rna_dendrograms(rna_phylo_list_file)
Arguments
rna_dendro_list_file
A text file containing a list of sample files, one file name per line. Each file contains a matrix with expression values (preferably log2(TPM+1)) of all the genes in each tumor region and normal.
sjdlabgroup/metaITH documentation built on Nov. 5, 2019, 8:58 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/other_functions.R
Description
Takes in a text file containing list of sample files. Creates a RNA distance matrix, containing the distance between all the tumor regions and normal, a RNA tree topology file, and a RNA unrooted dendrogram.
Usage
1 | rna_dendrograms(rna_phylo_list_file)
|
Arguments
rna_dendro_list_file |
A text file containing a list of sample files, one file name per line. Each file contains a matrix with expression values (preferably log2(TPM+1)) of all the genes in each tumor region and normal. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.