multi_level_divergence_diversity: Performs a multi-level divergence and diversity analysis
In sjdlabgroup/metaITH: A Tool for Analyzing Intratumor Heterogeneity at Multiple Levels
View source: R/other_functions.R
Description
Takes in text file containing list of samples, one sample per line, and distance matrix files generated by dna_phylograms, rna_phylograms, and immune_phylograms methods.
Outputs a png file containing 6 plots, 3 diversity/divergence plots and 3 diversity plots.
NOTE: Requires output of functions dna_dendrograms, rna_dendrograms, and immune_dendrograms to be in same folder
Usage
1
multi_level_divergence_diversity(sample_names_file)
Arguments
sample_names_file
A text file containing list of sample names, one file name per line
sjdlabgroup/metaITH documentation built on Nov. 5, 2019, 8:58 a.m.
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View source: R/other_functions.R
Description
Takes in text file containing list of samples, one sample per line, and distance matrix files generated by dna_phylograms, rna_phylograms, and immune_phylograms methods. Outputs a png file containing 6 plots, 3 diversity/divergence plots and 3 diversity plots. NOTE: Requires output of functions dna_dendrograms, rna_dendrograms, and immune_dendrograms to be in same folder
Usage
1 | multi_level_divergence_diversity(sample_names_file)
|
Arguments
sample_names_file |
A text file containing list of sample names, one file name per line |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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