likelihood_profs: Return likelihood profiles

In skgallagher/InfectionTrees: Sample, Analyze, and Plot Infection Trees

Description

Return likelihood profiles

Usage

likelihood_profs(
  best_pars,
  max_loglike,
  mc_trees,
  covariate_names,
  alpha = 0.05,
  multiple_outside_transmissions = FALSE
)

Arguments

best_pars	vector of MLE
max_loglike	loglike value from MLE
mc_trees	trees, output from sample_mc_trees)
covariate_names	names of covariates
alpha	alpha-value to make a (1-alpha)% CI
multiple_outside_transmissions	logical indicating to use base model or multiple outside transmissions model.

Value

matrix of dimension (length of best_pars) x 3 where the columns are the best parameter estimate, the lower CI (lower) and upper CI (upper) @export

skgallagher/InfectionTrees documentation built on July 28, 2021, 2:14 p.m.