loglike_wrapper: Wrapper to optimize over a single variable for likelihood...

In skgallagher/InfectionTrees: Sample, Analyze, and Plot Infection Trees

Description

Wrapper to optimize over a single variable for likelihood profiling

Usage

loglike_wrapper(
  x,
  max_loglike,
  best_pars,
  mc_trees,
  covariate_names,
  alpha = 0.05,
  beta_index = 1,
  multiple_outside_transmissions = FALSE
)

Arguments

x	parameter to optimize over
max_loglike	maximum loglike value from output
best_pars	vector of best parameters
mc_trees	output of sample_mc_trees
covariate_names	covariate names to look over
alpha	α-value for computing confidence intervals.
beta_index	which parameter to optimize over.
multiple_outside_transmissions	whether to use base model or not

Details

internal function only. This is for the general case

Value

zeros of likelihood profiling for given alpha

skgallagher/InfectionTrees documentation built on July 28, 2021, 2:14 p.m.