summarize_binary_cov_trees: Condense trees into a smaller format

In skgallagher/InfectionTrees: Sample, Analyze, and Plot Infection Trees

Description

Condense trees into a smaller format

Usage

summarize_binary_cov_trees(trees, multiple_outside_transmissions = FALSE)

Arguments

trees	data frame with the following columns cluster_id cluster ID n_inf number of infected by this individual x binary covariate value (0/1) gen generation number
multiple_outside_transmissions	default is FALSE

Value

data frame with the following columns

mc_freq

number of MC trees where this occurred

cluster_size

size of cluster

x_pos

number of positive x

x_neg

number of negative x

x_pos_trans

number of transmissions from positives

x_neg_trans

number of transmissions from negatives

root_node

value of the root node

skgallagher/InfectionTrees documentation built on July 28, 2021, 2:14 p.m.