mc_trees_to_A_infects_B: Looks at most likely transmissions from A to B for a cluster

In skgallagher/InfectionTrees: Sample, Analyze, and Plot Infection Trees

Description

Looks at most likely transmissions from A to B for a cluster

Usage

mc_trees_to_A_infects_B(
  my_id,
  par_ests,
  mc_trees,
  output = "tidy",
  multiple_outside_transmissions = FALSE
)

Arguments

my_id	ID of cluster to analyze
par_ests	parameter estimates (must be named and have corresponding columns in mc_trees)
mc_trees	output from sample_mc_trees
output	either "tidy" or "matrix"
multiple_outside_transmissions	logical indicating which model to calculate likelihood

Value

either a n \times n matrix where n is the number of individuals in the cluster and entry i,j is the probability that individual A infects individual B or a data frame with the following columns

infector

ID of the infector

skgallagher/InfectionTrees documentation built on July 28, 2021, 2:14 p.m.