sample_mc_trees: Sample trees with same features as original but permuted...

In skgallagher/InfectionTrees: Sample, Analyze, and Plot Infection Trees

Description

Sample trees with same features as original but permuted through the trees

Usage

sample_mc_trees(
  observed_data,
  B = 100,
  covariate_names = "x",
  multiple_outside_transmissions = FALSE,
  replace_vars = FALSE
)

Arguments

observed_data	data frame with the following columns cluster_id unique cluster ID covariates covariates of the individuals
B	number of trees to sample
covariate_names	string names of covariates
multiple_outside_transmissions	logical indicating whether we allow multiple outside transmissions or not. Default is FALSE
replace_vars	logical indicating whether we can re sample from the covariate df. Default is FALSE

Value

data frame with the following columns

skgallagher/InfectionTrees documentation built on July 28, 2021, 2:14 p.m.