ENCODE: Transcription factor targets estimated from ENCODE data

In slowkow/tftargets: Human Transcription Factor Targets

Description

Human transcription factor targets estimated by selecting a subset of ChIP-seq peaks with a score of 1000.

Usage

ENCODE

Format

A list of gene vectors keyed by transcription factor names.

Details

The ChIP-seq data used here is taken from sample ENCFF001UUQ. There are many other samples that you might want to use instead.

Source

http://hgdownload.cse.ucsc.edu/goldenpath/hg19/encodeDCC/wgEncodeRegTfbsClustered/

References

ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature 489, 57-74 (2012). (PubMed)

Examples

length(ENCODE)
ENCODE[1]
ENCODE[["STAT3"]]
hist(sapply(ENCODE, length))

slowkow/tftargets documentation built on May 30, 2019, 3:06 a.m.