Neph2012: Transcription factor targets from RegulatoryNetworks.org

In slowkow/tftargets: Human Transcription Factor Targets

Description

Human transcription factor targets obtained from DNaseI footprinting and TF recognition sequences. Targets only include transcription factors.

Usage

Neph2012

Format

A list of lists keyed by cell type names. Each sublist is keyed by transcription factor names and returns a gene vector.

Source

http://www.regulatorynetworks.org/

References

Neph, S., Stergachis, A. B., Reynolds, A., Sandstrom, R., Borenstein, E. & Stamatoyannopoulos, J. A. Circuitry and dynamics of human transcription factor regulatory networks. Cell 150, 1274-1286 (2012). (PubMed)

Examples

length(Neph2012)
Neph2012[["fHeart-DS12531"]][["STAT3"]]
hist(sapply(Neph2012[[1]], length))

slowkow/tftargets documentation built on May 30, 2019, 3:06 a.m.