Files in slowkow/tftargets

Human Transcription Factor Targets

CHANGELOG.md

DESCRIPTION

NAMESPACE

R/data.R README.md

data-raw/ITFP/01-download-html.sh

data-raw/ITFP/02-tables.sh

data-raw/ITFP/03-download-tables.sh

data-raw/ITFP/04-html-to-text.sh

data-raw/ITFP/05-text-to-tsv.sh

data-raw/ITFP/README.md

data-raw/ITFP/regulated_genes.tsv.gz

data-raw/Marbach2016/FANTOM5_individual_networks/394_individual_networks/synoviocyte.txt.bz2

data-raw/Marbach2016/FANTOM5_individual_networks/_README.txt

data-raw/Marbach2016/download.sh

data-raw/Neph2012/README.md

data-raw/Neph2012/human_2013-09-16/AG10803-DS12374/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/AoAF-DS13513/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/CD20-DS18208/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/CD34-DS12274/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/GM06990-DS7748/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/GM12865-DS12436/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/HAEpiC-DS12663/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/HAh-DS15192/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/HCF-DS12501/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/HCM-DS12599/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/HCPEpiC-DS12447/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/HEEpiC-DS12763/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/HFF-DS15115/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/HIPEpiC-DS12684/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/HMF-DS13368/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/HMVEC_LLy-DS13185/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/HMVEC_dBlAd-DS13337/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/HMVEC_dBlNeo-DS13242/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/HMVEC_dLyNeo-DS13150/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/HPAF-DS13411/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/HPF-DS13390/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/HPdLF-DS13573/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/HRCE-DS10666/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/HSMM-DS14426/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/HVMF-DS13981/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/HepG2-DS7764/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/IMR90-DS13219/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/K562-DS9767/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/NB4-DS12543/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/NHA-DS12800/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/NHDF_Ad-DS12863/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/NHDF_Neo-DS11923/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/NHLF-DS12829/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/SAEC-DS10518/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/SKNSH-DS8482/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/SkMC-DS11949/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/all.filtered.transfac

data-raw/Neph2012/human_2013-09-16/fBrain-DS11872/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/fHeart-DS12531/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/fLung-DS14724/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/gene2entrez.tsv

data-raw/Neph2012/human_2013-09-16/hESCT0-DS11909/genes.regulate.genes.bz2

data-raw/Neph2012/human_2013-09-16/hTH1-DS7840/genes.regulate.genes.bz2

data-raw/Neph2012/mm9_2013-12-03/MEL-DS13036/genes.regulate.genes.bz2

data-raw/Neph2012/mm9_2013-12-03/ZhBTc4-DS15236/genes.regulate.genes.bz2

data-raw/Neph2012/mm9_2013-12-03/ZhBTc4-DS17562/genes.regulate.genes.bz2

data-raw/Neph2012/mm9_2013-12-03/ZhBTc4-DS17616/genes.regulate.genes.bz2

data-raw/Neph2012/mm9_2013-12-03/m3134-DS8497/genes.regulate.genes.bz2

data-raw/Neph2012/mm9_2013-12-03/m416B-DS14099/genes.regulate.genes.bz2

data-raw/Neph2012/mm9_2013-12-03/mA20-DS16695/genes.regulate.genes.bz2

data-raw/Neph2012/mm9_2013-12-03/mATn-DS17070/genes.regulate.genes.bz2

data-raw/Neph2012/mm9_2013-12-03/mATr-DS20149/genes.regulate.genes.bz2

data-raw/Neph2012/mm9_2013-12-03/mB-DS16168/genes.regulate.genes.bz2

data-raw/Neph2012/mm9_2013-12-03/mB-DS17866/genes.regulate.genes.bz2

data-raw/Neph2012/mm9_2013-12-03/mBrain-DS12727/genes.regulate.genes.bz2

data-raw/Neph2012/mm9_2013-12-03/mCJ7-DS13320/genes.regulate.genes.bz2

data-raw/Neph2012/mm9_2013-12-03/mGenitalFatPad-DS18182/genes.regulate.genes.bz2

data-raw/Neph2012/mm9_2013-12-03/mHeart-DS18138/genes.regulate.genes.bz2

data-raw/Neph2012/mm9_2013-12-03/mKidney-DS13948/genes.regulate.genes.bz2

data-raw/Neph2012/mm9_2013-12-03/mLiver-DS14605/genes.regulate.genes.bz2

data-raw/Neph2012/mm9_2013-12-03/mLung-DS14479/genes.regulate.genes.bz2

data-raw/Neph2012/mm9_2013-12-03/mNIH_3T3-DS16900/genes.regulate.genes.bz2

data-raw/Neph2012/mm9_2013-12-03/mRetina-DS20004/genes.regulate.genes.bz2

data-raw/Neph2012/mm9_2013-12-03/mTN-DS16171/genes.regulate.genes.bz2

data-raw/Neph2012/mm9_2013-12-03/mTN-DS17080/genes.regulate.genes.bz2

data-raw/Neph2012/mm9_2013-12-03/mTR-DS17864/genes.regulate.genes.bz2

data-raw/Neph2012/mm9_2013-12-03/mThymus-DS18819/genes.regulate.genes.bz2

data-raw/Neph2012/mm9_2013-12-03/mfBrain-DS14536/genes.regulate.genes.bz2

data-raw/TRED/01-download-factors.py

data-raw/TRED/02-download-targets.py

data-raw/TRED/03-gid-to-entrez.py

data-raw/TRED/README.md

data-raw/TRED/factors.tsv.gz

data-raw/TRED/gid_entrez.tsv.gz

data-raw/TRED/targets.tsv.gz

data-raw/TRRUST/README.md

data-raw/TRRUST/download.sh

data-raw/TRRUST/trrust_rawdata.txt.gz

data-raw/UCSC/README.md

data-raw/UCSC/knownGene.txt.gz

data-raw/UCSC/knownToLocusLink.txt.gz

data-raw/make_rdata.R

data/tftargets.rda

figures/ENCODE_histogram.png

figures/ITFP_histogram.png

figures/Marbach2016_histogram.png

figures/Marbach2016_targets_vs_weight.png

figures/Marbach2016_weights_histogram.png

figures/Neph2012_1_histogram.png

figures/TRED_histogram.png

figures/TRRUST_histogram.png

figures/transcription_factor_image.jpg

man/ENCODE.Rd man/ITFP.Rd man/Marbach2016.Rd man/Neph2012.Rd man/TRED.Rd man/TRRUST.Rd

slowkow/tftargets documentation built on May 30, 2019, 3:06 a.m.