Marbach2016: Transcription factor targets from RegulatoryCircuits.org
In slowkow/tftargets: Human Transcription Factor Targets
Description
Usage
Format
Source
References
Examples
Description
This data is taken from the synoviocyte.txt file. There are many
other cell types available that you might want to use instead.
Usage
1
Format
A list of gene vectors keyed by transcription factor names.
Source
http://www.regulatorycircuits.org/
References
Marbach, D., Lamparter, D., Quon, G., Kellis, M., Kutalik, Z.
& Bergmann, S. Tissue-specific regulatory circuits reveal variable modular
perturbations across complex diseases. Nat. Methods 13, 366-370 (2016).
(PubMed)
Examples
1
2
3
4
length(Marbach2016)
Marbach2016[1]
Marbach2016[["STAT3"]]
hist(sapply(Marbach2016, length))
slowkow/tftargets documentation built on May 30, 2019, 3:06 a.m.
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Description Usage Format Source References Examples
Description
This data is taken from the synoviocyte.txt file. There are many
other cell types available that you might want to use instead.
Usage
1 |
Format
A list of gene vectors keyed by transcription factor names.
Source
http://www.regulatorycircuits.org/
References
Marbach, D., Lamparter, D., Quon, G., Kellis, M., Kutalik, Z. & Bergmann, S. Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases. Nat. Methods 13, 366-370 (2016). (PubMed)
Examples
1 2 3 4 | length(Marbach2016)
Marbach2016[1]
Marbach2016[["STAT3"]]
hist(sapply(Marbach2016, length))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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