calcUJsample: Calculate unweighted Jaccard distance between two OTU vectors
In smvargas/PERMANOVA: Power estimation for microbiome studies using pairwise distances and PERMANOVA.
Description
Usage
Arguments
Value
See Also
Examples
Description
Wrapper for vegan package distance function, to calculate unweighted Jaccard distance.
Usage
1
2
calcUJsample(sampleA = rareSamp(simSamp(), 0.5),
sampleB = rareSamp(simSamp(), 0.5))
Arguments
sampleA
numeric vector labelled with OTU names
sampleB
numeric vector labelled with OTU names
Value
numeric unweighted Jaccard distance
See Also
Examples
1
calcUJsample(rareSamp(simSamp(100),0.5),rareSamp(simSamp(100),0.5))
smvargas/PERMANOVA documentation built on May 20, 2019, 12:37 p.m.
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Description Usage Arguments Value See Also Examples
Description
Wrapper for vegan package distance function, to calculate unweighted Jaccard distance.
Usage
1 2 | calcUJsample(sampleA = rareSamp(simSamp(), 0.5),
sampleB = rareSamp(simSamp(), 0.5))
|
Arguments
sampleA |
numeric vector labelled with OTU names |
sampleB |
numeric vector labelled with OTU names |
Value
numeric unweighted Jaccard distance
See Also
Examples
1 | calcUJsample(rareSamp(simSamp(100),0.5),rareSamp(simSamp(100),0.5))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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