rareSamp: Rarefy a simulated OTU vector
In smvargas/PERMANOVA: Power estimation for microbiome studies using pairwise distances and PERMANOVA.
Description
Usage
Arguments
Value
See Also
Examples
Description
Performs random subsampling without replacement from simulated OTU vector.
Usage
1
rareSamp(otu_vector, rare_depth = 0.5)
Arguments
otu_vector
numeric vector labelled with OTU names
rare_depth
proportion of sequence counts to retain after subsampling
Value
numeric vector labelled with OTU names
See Also
Examples
1
smvargas/PERMANOVA documentation built on May 20, 2019, 12:37 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value See Also Examples
Description
Performs random subsampling without replacement from simulated OTU vector.
Usage
1 | rareSamp(otu_vector, rare_depth = 0.5)
|
Arguments
otu_vector |
numeric vector labelled with OTU names |
rare_depth |
proportion of sequence counts to retain after subsampling |
Value
numeric vector labelled with OTU names
See Also
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.