simTreeList: Simulate a phylogenetic tree with specified OTU names
In smvargas/PERMANOVA: Power estimation for microbiome studies using pairwise distances and PERMANOVA.
Description
Usage
Arguments
Details
Value
See Also
Examples
Description
Generates a random phylogenetic tree based upon the OTUs included in a list of OTU tables.
Usage
1
simTreeList(otu_table_list)
Arguments
otu_table_list
a list of OTU table matrices with one column per subject and one row per OTU
Details
A wrapper for the rtree function included with the ape package.
Value
An object of the class phylo.
See Also
simPowerU, simPowerW, rtree, write.tree
Examples
1
simTreeList(simPower(c(100,100,100),100,10,0.5,seq(0,0.3,length.out=100)))
smvargas/PERMANOVA documentation built on May 20, 2019, 12:37 p.m.
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Description Usage Arguments Details Value See Also Examples
Description
Generates a random phylogenetic tree based upon the OTUs included in a list of OTU tables.
Usage
1 | simTreeList(otu_table_list)
|
Arguments
otu_table_list |
a list of OTU table matrices with one column per subject and one row per OTU |
Details
A wrapper for the rtree function included with the ape package.
Value
An object of the class phylo.
See Also
simPowerU, simPowerW, rtree, write.tree
Examples
1 | simTreeList(simPower(c(100,100,100),100,10,0.5,seq(0,0.3,length.out=100)))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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