smwoodman/eSDM
Ensemble Tool for Predictions from Species Distribution Models

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Files in smwoodman/eSDM
Ensemble Tool for Predictions from Species Distribution Models

.Rbuildignore
.gitattributes
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
License.md
NAMESPACE
NEWS.md R/data.R R/eSDM-internal.R R/eSDM-package.R R/eSDM_GUI.R R/ensemble_create.R R/ensemble_rescale.R R/evaluation_metrics.R R/model_abundance.R R/overlay_sdm.R R/pts2poly_centroids.R R/pts2poly_vertices.R README.md
_pkgdown.yml
cran-comments.md data-raw/GSHHG_shp.R
data-raw/README.txt
data-raw/create_data.R data-raw/create_ens_sf.R data-raw/create_extdata.R
data-raw/eSDM_ME&E_final.RDATA
data-raw/eSDM_shpExport (1)/eSDM_Sample_predictions_1_csv__PredModel1__orig.dbf
data-raw/eSDM_shpExport (1)/eSDM_Sample_predictions_1_csv__PredModel1__orig.prj
data-raw/eSDM_shpExport (1)/eSDM_Sample_predictions_1_csv__PredModel1__orig.shp
data-raw/eSDM_shpExport (1)/eSDM_Sample_predictions_1_csv__PredModel1__orig.shx
data-raw/eSDM_shpExport (2)/eSDM_Sample_predictions_4_gdb__Pred1__orig.dbf
data-raw/eSDM_shpExport (2)/eSDM_Sample_predictions_4_gdb__Pred1__orig.prj
data-raw/eSDM_shpExport (2)/eSDM_Sample_predictions_4_gdb__Pred1__orig.shp
data-raw/eSDM_shpExport (2)/eSDM_Sample_predictions_4_gdb__Pred1__orig.shx
data-raw/eSDM_shpExport/eSDM_Sample_predictions_2_csv__pred__orig.dbf
data-raw/eSDM_shpExport/eSDM_Sample_predictions_2_csv__pred__orig.prj
data-raw/eSDM_shpExport/eSDM_Sample_predictions_2_csv__pred__orig.shp
data-raw/eSDM_shpExport/eSDM_Sample_predictions_2_csv__pred__orig.shx
data-raw/ens_sf_unw.rda
data-raw/ens_sf_wtss.rda
data-raw/figure2_overlay.R data-raw/figure3.R data-raw/figure4.R data-raw/figure5.R data-raw/figure_plot.R
data-raw/valid_sf_pres.rda
data/gshhg.l.L16.rda
data/preds.1.rda
data/preds.2.rda
data/preds.3.rda
data/validation.data.rda
eSDM.Rproj
inst/CITATION
inst/eSDM_vignette_helper.R
inst/extdata/Predictions_Beckeretal2016.rds
inst/extdata/Predictions_Beckeretal2016_overlaid.rds
inst/extdata/Predictions_Hazenetal2017.rds
inst/extdata/Predictions_Hazenetal2017_overlaid.rds
inst/extdata/Predictions_Redfernetal2017.rds
inst/extdata/README.txt
inst/extdata/Shapefiles/Study_Area_CCE.dbf
inst/extdata/Shapefiles/Study_Area_CCE.prj
inst/extdata/Shapefiles/Study_Area_CCE.sbn
inst/extdata/Shapefiles/Study_Area_CCE.sbx
inst/extdata/Shapefiles/Study_Area_CCE.shp
inst/extdata/Shapefiles/Study_Area_CCE.shp.xml
inst/extdata/Shapefiles/Study_Area_CCE.shx
inst/extdata/Table3.csv
inst/extdata/eSDM_Validation_data_all.rds
inst/shiny/app.R inst/shiny/server_1_loadModels/server_1_loadModels.R inst/shiny/server_1_loadModels/server_1_loadModels_create_local.R inst/shiny/server_1_loadModels/server_1_loadModels_csv.R inst/shiny/server_1_loadModels/server_1_loadModels_funcs.R inst/shiny/server_1_loadModels/server_1_loadModels_raster.R inst/shiny/server_1_loadModels/server_1_loadModels_renderUI.R inst/shiny/server_1_loadModels/server_1_loadModels_shpgdb.R inst/shiny/server_1_loadModels/server_1_loadModels_shpgdb_create_local.R inst/shiny/server_2_overlay/server_2_overlay.R inst/shiny/server_2_overlay/server_2_overlay_funcs.R inst/shiny/server_2_overlay/server_2_overlay_loadPoly_csv.R inst/shiny/server_2_overlay/server_2_overlay_loadPoly_provided.R inst/shiny/server_2_overlay/server_2_overlay_loadPoly_shpgdb.R inst/shiny/server_2_overlay/server_2_overlay_overlayModels.R inst/shiny/server_2_overlay/server_2_overlay_overlayModels_base.R inst/shiny/server_2_overlay/server_2_overlay_renderUI.R inst/shiny/server_3_createEns/server_3_createEns.R inst/shiny/server_3_createEns/server_3_createEns_create.R inst/shiny/server_3_createEns/server_3_createEns_create_regexc.R inst/shiny/server_3_createEns/server_3_createEns_create_weighted.R inst/shiny/server_3_createEns/server_3_createEns_renderUI.R inst/shiny/server_4_evalMetrics/server_4_evalMetrics.R inst/shiny/server_4_evalMetrics/server_4_evalMetrics_funcs.R inst/shiny/server_4_evalMetrics/server_4_evalMetrics_loadData.R inst/shiny/server_4_evalMetrics/server_4_evalMetrics_renderUI.R inst/shiny/server_5_prettyPlot/server_5_prettyPlot.R inst/shiny/server_5_prettyPlot/server_5_prettyPlot_addobj.R inst/shiny/server_5_prettyPlot/server_5_prettyPlot_addobj_renderUI.R inst/shiny/server_5_prettyPlot/server_5_prettyPlot_addobj_update.R inst/shiny/server_5_prettyPlot/server_5_prettyPlot_download.R inst/shiny/server_5_prettyPlot/server_5_prettyPlot_funcs.R inst/shiny/server_5_prettyPlot/server_5_prettyPlot_plot.R inst/shiny/server_5_prettyPlot/server_5_prettyPlot_prep.R inst/shiny/server_5_prettyPlot/server_5_prettyPlot_renderUI.R inst/shiny/server_5_prettyPlot/server_5_prettyPlot_toplot.R inst/shiny/server_5_prettyPlot/server_5_prettyPlot_update.R inst/shiny/server_5_prettyPlot/server_5_prettyPlot_update_renderUI.R inst/shiny/server_6_export/server_6_export.R inst/shiny/server_6_export/server_6_export_renderUI.R inst/shiny/server_other/server_checks.R inst/shiny/server_other/server_funcs.R inst/shiny/server_other/server_funcs_preview360.R inst/shiny/server_other/server_plots.R inst/shiny/server_other/server_plots_download.R inst/shiny/server_other/server_plots_funcs.R inst/shiny/server_other/server_reactiveValues.R inst/shiny/server_other/server_render.R inst/shiny/server_other/server_roadmap_download.R inst/shiny/server_other/server_tables.R inst/shiny/server_other/server_workspace.R inst/shiny/ui_files/ui_0_roadmap.R inst/shiny/ui_files/ui_1_loadModels.R inst/shiny/ui_files/ui_2_overlay.R inst/shiny/ui_files/ui_3_createEns.R inst/shiny/ui_files/ui_4_evalMetrics.R inst/shiny/ui_files/ui_5_prettyPlot.R inst/shiny/ui_files/ui_6_export.R inst/shiny/ui_files/ui_7_manual.R inst/shiny/ui_files/ui_common.R inst/shiny/ui_files/ui_funcs.R inst/shiny/www/eSDM_manual.pdf
inst/shiny/www/noaa_logo.png
man/eSDM-package.Rd man/eSDM_GUI.Rd man/ensemble_create.Rd man/ensemble_rescale.Rd man/evaluation_metrics.Rd man/gshhg.l.L16.Rd man/model_abundance.Rd man/overlay_sdm.Rd man/preds.Rd man/pts2poly_centroids.Rd man/pts2poly_vertices.Rd man/validation.data.Rd
pkgdown/extra.css
tests/testthat.R tests/testthat/test-ensemble.R tests/testthat/test-internals.R tests/testthat/test-model_abundance.R tests/testthat/test-overlay_sdm.R tests/testthat/test-pts2poly.R
vignettes/.gitignore
vignettes/example-analysis.Rmd
smwoodman/eSDM documentation built on Aug. 21, 2024, 5:16 p.m.

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