API for snaketron/genphen
A tool for quantification of associations between genotypes and phenotypes with statistical learning techniques such as random forests and support vector machines as well as with Bayesian inference using hierarchical models

Global functions
checkInputBayes Source code
checkInputRf Source code
checkInputSvm Source code
convertMsaToGenotype Source code
dichotomous.phenotype.saap Man page
genotype.saap Man page
genotype.saap.msa Man page
genotype.snp Man page
genotype.snp.msa Man page
getCohensD Source code
getCohensKappa Source code
getFetScore Source code
getGeneralStats Source code
getHdi Source code
getLogisticRegressionScore Source code
getRfClassification Source code
getSvmClassification Source code
getTTestScore Source code
phenotype.saap Man page
phenotype.snp Man page
plotGenphenBayes Man page Source code
plotGenphenRfSvm Man page Source code
plotManhattan Man page Source code
plotSpecificGenotype Man page Source code
runContinuousLogisticRStan Source code
runContinuousTtestStan Source code
runDichotomousStan Source code
runGenphenBayes Man page Source code
runGenphenRf Man page Source code
runGenphenSvm Man page Source code
setResultTypesBayesian Source code
setResultTypesRfSvm Source code
snaketron/genphen documentation built on June 21, 2017, 2:22 p.m.