genotype.snp.msa: SNP genotype dataset (msa)

In snaketron/genphen: genphen: tool for quantification of genotype-phenotype associations in genome wide association studies (GWAS)

Description

The genotype.snp.msa data is a multiple sequence alignment in Biostrings DNAMultipleAlignment format. It contains 51 DNA sequences, each with 100 sites (SNPs), taken from the publicly available Mouse Hapmap data. We used it in combination with the phenotype.snp data to compute the association between each SNP and the phenotype data.

Usage

data("genotype.snp.msa")

Format

DNAMultipleAlignment object with 51 sequences each made of 100 nucleotides (SNPs).

Value

DNAMultipleAlignment object with 51 sequences each made of 100 nucleotides (SNPs).

Source

http://mouse.cs.ucla.edu/mousehapmap/emma.html

Examples

data("genotype.snp.msa")

snaketron/genphen documentation built on Oct. 1, 2021, 8:09 a.m.