Files in snaketron/genphen
A tool for quantification of associations between genotypes and phenotypes with statistical learning techniques such as random forests and support vector machines as well as with Bayesian inference using hierarchical models

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/genphen.R R/plot.R R/utility.R README.md
data/dichotomous.phenotype.saap.RData
data/genotype.saap.RData
data/genotype.saap.msa.RData
data/genotype.snp.RData
data/genotype.snp.msa.RData
data/phenotype.saap.RData
data/phenotype.snp.RData
genphen.Rproj
inst/CITATION
inst/NEWS.Rd
inst/doc/genphenManual.pdf
inst/extdata/fisher.txt
inst/extdata/fishers.stan
inst/extdata/fishers_model.RData
inst/extdata/genotype.saap.fasta
inst/extdata/genotype.snp.fasta
inst/extdata/logistic.stan
inst/extdata/logistic.txt
inst/extdata/logistic_model.RData
inst/extdata/ttest.stan
inst/extdata/ttest_model.RData
inst/extdata/ttest_n.txt
inst/extdata/ttest_t.txt
man/dichotomous.phenotype.saap.Rd man/genotype.saap.Rd man/genotype.saap.msa.Rd man/genotype.snp.Rd man/genotype.snp.msa.Rd man/phenotype.saap.Rd man/phenotype.snp.Rd man/plotGenphenBayes.Rd man/plotGenphenRfSvm.Rd man/plotManhattan.Rd man/plotSpecificGenotype.Rd man/runGenphenBayes.Rd man/runGenphenRf.Rd man/runGenphenSvm.Rd
test.data/entry_bad_ttest.RData
test.data/entry_fet.RData
test.data/entry_good_ttest.RData
test.data/kappaTest.R test.data/testModel.R test.data/tutorialCode.R vignettes/fig1.pdf vignettes/fig2.pdf vignettes/fig3.pdf vignettes/fig4.pdf
vignettes/genphenManual.Rnw
vignettes/genphenManual.pdf
vignettes/genphenManual.tex
snaketron/genphen documentation built on June 21, 2017, 2:22 p.m.