Man pages for snaketron/genphen
A tool for quantification of associations between genotypes and phenotypes with statistical learning techniques such as random forests and support vector machines as well as with Bayesian inference using hierarchical models

dichotomous.phenotype.saapDichotomous phenotype dataset
genotype.saapSAAP genotype dataset
genotype.saap.msaSAAP genotype dataset (msa)
genotype.snpSNP genotype dataset
genotype.snp.msaSNP genotype dataset (msa)
phenotype.saapContinuous phenotype dataset
phenotype.snpContinuous phenotype dataset
plotGenphenBayesVisualizing the genphen results of runGenphenBayes
plotGenphenRfSvmVisualizing the genphen results of runGenphenRf or...
plotManhattanVisualizing genphen results with Manhattan plots
plotSpecificGenotypeVisualizing specific genotypes
runGenphenBayesConducting genetic association analysis with Bayesian...
runGenphenRfConducting genetic association analysis with random forest
runGenphenSvmConducting genetic association analysis with linear support...
snaketron/genphen documentation built on June 21, 2017, 2:22 p.m.