Files in sneumann/CAMERA
Collection of annotation related methods for mass spectrometry data
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/00xsAnnotate.R
R/compoundQuantiles.R
R/fastMatch.R
R/fct_findAdducts.R
R/fct_findIsotopes.R
R/fct_findIsotopesWithValidation.R
R/fct_groupCorr.R
R/init.R
R/psDist.R
R/pspec2metfrag.R
R/ruleSet.R
R/xsAnnotate.R
R/xsVisualise.R
R/zzz.R
README.md
data/mm14.rda
inst/CITATION
inst/NEWS
inst/ONEWS
inst/lists/ions.csv
inst/lists/neutraladdition.csv
inst/lists/neutralloss.csv
inst/mzML/MM14.mzML
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_10/Br_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_10/C_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_10/Cl_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_10/F_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_10/H_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_10/I_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_10/IsotopeQuantiles__iso_1.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_10/IsotopeQuantiles__iso_2.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_10/IsotopeQuantiles__iso_3.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_10/IsotopeQuantiles__iso_4.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_10/IsotopeQuantiles__iso_5.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_10/N_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_10/O_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_10/P_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_10/S_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_10/Si_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_10/Unknown_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_100/Br_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_100/C_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_100/Cl_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_100/F_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_100/H_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_100/I_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_100/IsotopeQuantiles__iso_1.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_100/IsotopeQuantiles__iso_2.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_100/IsotopeQuantiles__iso_3.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_100/IsotopeQuantiles__iso_4.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_100/IsotopeQuantiles__iso_5.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_100/N_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_100/O_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_100/P_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_100/S_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_100/Si_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_100/Unknown_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_25/Br_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_25/C_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_25/Cl_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_25/F_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_25/H_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_25/I_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_25/IsotopeQuantiles__iso_1.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_25/IsotopeQuantiles__iso_2.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_25/IsotopeQuantiles__iso_3.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_25/IsotopeQuantiles__iso_4.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_25/IsotopeQuantiles__iso_5.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_25/N_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_25/O_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_25/P_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_25/S_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_25/Si_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_25/Unknown_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_250/Br_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_250/C_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_250/Cl_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_250/F_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_250/H_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_250/I_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_250/IsotopeQuantiles__iso_1.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_250/IsotopeQuantiles__iso_2.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_250/IsotopeQuantiles__iso_3.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_250/IsotopeQuantiles__iso_4.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_250/IsotopeQuantiles__iso_5.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_250/N_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_250/O_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_250/P_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_250/S_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_250/Si_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_250/Unknown_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_50/Br_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_50/C_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_50/Cl_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_50/F_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_50/H_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_50/I_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_50/IsotopeQuantiles__iso_1.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_50/IsotopeQuantiles__iso_2.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_50/IsotopeQuantiles__iso_3.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_50/IsotopeQuantiles__iso_4.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_50/IsotopeQuantiles__iso_5.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_50/N_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_50/O_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_50/P_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_50/S_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_50/Si_quantiles.tsv
inst/quantiles/lib_LipidMaps__maxDa_500/windowSize_50/Unknown_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_10/Br_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_10/C_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_10/Cl_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_10/F_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_10/H_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_10/I_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_10/IsotopeQuantiles__iso_1.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_10/IsotopeQuantiles__iso_2.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_10/IsotopeQuantiles__iso_3.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_10/IsotopeQuantiles__iso_4.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_10/IsotopeQuantiles__iso_5.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_10/N_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_10/O_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_10/P_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_10/S_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_10/Si_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_10/Unknown_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_100/Br_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_100/C_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_100/Cl_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_100/F_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_100/H_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_100/I_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_100/IsotopeQuantiles__iso_1.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_100/IsotopeQuantiles__iso_2.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_100/IsotopeQuantiles__iso_3.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_100/IsotopeQuantiles__iso_4.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_100/IsotopeQuantiles__iso_5.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_100/N_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_100/O_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_100/P_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_100/S_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_100/Si_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_100/Unknown_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_25/Br_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_25/C_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_25/Cl_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_25/F_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_25/H_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_25/I_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_25/IsotopeQuantiles__iso_1.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_25/IsotopeQuantiles__iso_2.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_25/IsotopeQuantiles__iso_3.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_25/IsotopeQuantiles__iso_4.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_25/IsotopeQuantiles__iso_5.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_25/N_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_25/O_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_25/P_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_25/S_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_25/Si_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_25/Unknown_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_250/Br_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_250/C_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_250/Cl_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_250/F_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_250/H_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_250/I_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_250/IsotopeQuantiles__iso_1.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_250/IsotopeQuantiles__iso_2.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_250/IsotopeQuantiles__iso_3.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_250/IsotopeQuantiles__iso_4.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_250/IsotopeQuantiles__iso_5.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_250/N_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_250/O_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_250/P_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_250/S_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_250/Si_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_250/Unknown_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_50/Br_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_50/C_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_50/Cl_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_50/F_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_50/H_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_50/I_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_50/IsotopeQuantiles__iso_1.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_50/IsotopeQuantiles__iso_2.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_50/IsotopeQuantiles__iso_3.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_50/IsotopeQuantiles__iso_4.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_50/IsotopeQuantiles__iso_5.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_50/N_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_50/O_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_50/P_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_50/S_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_50/Si_quantiles.tsv
inst/quantiles/lib_chebi__maxDa_1000/windowSize_50/Unknown_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_10/Br_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_10/C_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_10/Cl_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_10/F_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_10/H_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_10/I_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_10/IsotopeQuantiles__iso_1.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_10/IsotopeQuantiles__iso_2.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_10/IsotopeQuantiles__iso_3.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_10/IsotopeQuantiles__iso_4.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_10/IsotopeQuantiles__iso_5.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_10/N_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_10/O_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_10/P_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_10/S_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_10/Si_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_10/Unknown_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_100/Br_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_100/C_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_100/Cl_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_100/F_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_100/H_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_100/I_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_100/IsotopeQuantiles__iso_1.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_100/IsotopeQuantiles__iso_2.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_100/IsotopeQuantiles__iso_3.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_100/IsotopeQuantiles__iso_4.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_100/IsotopeQuantiles__iso_5.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_100/N_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_100/O_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_100/P_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_100/S_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_100/Si_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_100/Unknown_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_25/Br_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_25/C_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_25/Cl_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_25/F_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_25/H_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_25/I_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_25/IsotopeQuantiles__iso_1.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_25/IsotopeQuantiles__iso_2.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_25/IsotopeQuantiles__iso_3.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_25/IsotopeQuantiles__iso_4.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_25/IsotopeQuantiles__iso_5.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_25/N_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_25/O_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_25/P_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_25/S_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_25/Si_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_25/Unknown_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_250/Br_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_250/C_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_250/Cl_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_250/F_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_250/H_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_250/I_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_250/IsotopeQuantiles__iso_1.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_250/IsotopeQuantiles__iso_2.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_250/IsotopeQuantiles__iso_3.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_250/IsotopeQuantiles__iso_4.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_250/IsotopeQuantiles__iso_5.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_250/N_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_250/O_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_250/P_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_250/S_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_250/Si_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_250/Unknown_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_50/Br_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_50/C_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_50/Cl_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_50/F_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_50/H_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_50/I_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_50/IsotopeQuantiles__iso_1.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_50/IsotopeQuantiles__iso_2.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_50/IsotopeQuantiles__iso_3.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_50/IsotopeQuantiles__iso_4.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_50/IsotopeQuantiles__iso_5.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_50/N_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_50/O_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_50/P_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_50/S_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_50/Si_quantiles.tsv
inst/quantiles/lib_kegg__maxDa_1000/windowSize_50/Unknown_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_10/Br_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_10/C_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_10/Cl_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_10/F_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_10/H_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_10/I_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_10/IsotopeQuantiles__iso_1.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_10/IsotopeQuantiles__iso_2.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_10/IsotopeQuantiles__iso_3.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_10/IsotopeQuantiles__iso_4.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_10/IsotopeQuantiles__iso_5.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_10/N_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_10/O_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_10/P_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_10/S_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_10/Si_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_10/Unknown_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_100/Br_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_100/C_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_100/Cl_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_100/F_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_100/H_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_100/I_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_100/IsotopeQuantiles__iso_1.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_100/IsotopeQuantiles__iso_2.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_100/IsotopeQuantiles__iso_3.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_100/IsotopeQuantiles__iso_4.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_100/IsotopeQuantiles__iso_5.tsv
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inst/quantiles/lib_knapsack__maxDa_1500/windowSize_100/O_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_100/P_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_100/S_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_100/Si_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_100/Unknown_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_25/Br_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_25/C_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_25/Cl_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_25/F_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_25/H_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_25/I_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_25/IsotopeQuantiles__iso_1.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_25/IsotopeQuantiles__iso_2.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_25/IsotopeQuantiles__iso_3.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_25/IsotopeQuantiles__iso_4.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_25/IsotopeQuantiles__iso_5.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_25/N_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_25/O_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_25/P_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_25/S_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_25/Si_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_25/Unknown_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_250/Br_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_250/C_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_250/Cl_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_250/F_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_250/H_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_250/I_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_250/IsotopeQuantiles__iso_1.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_250/IsotopeQuantiles__iso_2.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_250/IsotopeQuantiles__iso_3.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_250/IsotopeQuantiles__iso_4.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_250/IsotopeQuantiles__iso_5.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_250/N_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_250/O_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_250/P_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_250/S_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_250/Si_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_250/Unknown_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_50/Br_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_50/C_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_50/Cl_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_50/F_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_50/H_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_50/I_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_50/IsotopeQuantiles__iso_1.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_50/IsotopeQuantiles__iso_2.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_50/IsotopeQuantiles__iso_3.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_50/IsotopeQuantiles__iso_4.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_50/IsotopeQuantiles__iso_5.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_50/N_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_50/O_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_50/P_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_50/S_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_50/Si_quantiles.tsv
inst/quantiles/lib_knapsack__maxDa_1500/windowSize_50/Unknown_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_10/Br_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_10/C_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_10/Cl_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_10/F_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_10/H_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_10/I_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_10/IsotopeQuantiles__iso_1.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_10/IsotopeQuantiles__iso_2.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_10/IsotopeQuantiles__iso_3.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_10/IsotopeQuantiles__iso_4.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_10/IsotopeQuantiles__iso_5.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_10/N_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_10/O_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_10/P_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_10/S_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_10/Si_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_10/Unknown_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_100/Br_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_100/C_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_100/Cl_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_100/F_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_100/H_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_100/I_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_100/IsotopeQuantiles__iso_1.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_100/IsotopeQuantiles__iso_2.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_100/IsotopeQuantiles__iso_3.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_100/IsotopeQuantiles__iso_4.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_100/IsotopeQuantiles__iso_5.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_100/N_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_100/O_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_100/P_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_100/S_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_100/Si_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_100/Unknown_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_25/Br_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_25/C_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_25/Cl_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_25/F_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_25/H_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_25/I_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_25/IsotopeQuantiles__iso_1.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_25/IsotopeQuantiles__iso_2.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_25/IsotopeQuantiles__iso_3.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_25/IsotopeQuantiles__iso_4.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_25/IsotopeQuantiles__iso_5.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_25/N_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_25/O_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_25/P_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_25/S_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_25/Si_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_25/Unknown_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_250/Br_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_250/C_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_250/Cl_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_250/F_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_250/H_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_250/I_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_250/IsotopeQuantiles__iso_1.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_250/IsotopeQuantiles__iso_2.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_250/IsotopeQuantiles__iso_3.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_250/IsotopeQuantiles__iso_4.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_250/IsotopeQuantiles__iso_5.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_250/N_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_250/O_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_250/P_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_250/S_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_250/Si_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_250/Unknown_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_50/Br_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_50/C_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_50/Cl_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_50/F_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_50/H_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_50/I_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_50/IsotopeQuantiles__iso_1.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_50/IsotopeQuantiles__iso_2.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_50/IsotopeQuantiles__iso_3.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_50/IsotopeQuantiles__iso_4.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_50/IsotopeQuantiles__iso_5.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_50/N_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_50/O_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_50/P_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_50/S_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_50/Si_quantiles.tsv
inst/quantiles/lib_pubchem__maxDa_3000/windowSize_50/Unknown_quantiles.tsv
inst/rules/extended_adducts_neg.csv
inst/rules/extended_adducts_pos.csv
inst/rules/primary_adducts_neg.csv
inst/rules/primary_adducts_pos.csv
inst/unitTests/Makefile
inst/unitTests/test_annotateDiffreport.R
inst/unitTests/test_compoundQuantiles.R
inst/unitTests/test_findAdductsMPI.R
inst/unitTests/test_generateRules.R
inst/unitTests/test_groupCorr.R
inst/unitTests/test_groupFWHM.R
inst/unitTests/test_kendrick.R
inst/unitTests/test_psDist.R
inst/unitTests/test_pspec2metfrag.R
man/annotate-methods.Rd
man/annotateDiffreport.Rd
man/calcCaS-methods.Rd
man/calcCiS-methods.Rd
man/calcIsotopes-methods.Rd
man/calcPC-methods.Rd
man/calcPC.hcs-methods.Rd
man/calcPC.lpc-methods.Rd
man/cleanParallel.Rd
man/combinexsAnnos.Rd
man/compoundLibraries.Rd
man/compoundQuantiles-class.Rd
man/compoundQuantiles.Rd
man/findAdducts-methods.Rd
man/findIsotopes-methods.Rd
man/findIsotopesWithValidation-methods.Rd
man/findKendrickMasses.Rd
man/findNeutralLoss.Rd
man/findNeutralLossSpecs.Rd
man/getAllPeakEICs-methods.Rd
man/getAtomCount-compoundQuantiles-method.Rd
man/getIsotopeCluster.Rd
man/getIsotopeProportion-compoundQuantiles-method.Rd
man/getPeaklist-methods.Rd
man/getReducedPeaklist-methods.Rd
man/getpspectra.Rd
man/groupCorr-methods.Rd
man/groupDen-methods.Rd
man/groupFWHM-methods.Rd
man/massWindowSizes.Rd
man/mm14.Rd
man/plotEIC.xsAnnotate.Rd
man/plotPsSpectrum.xsAnnotate.Rd
man/psDist-methods.Rd
man/pspec2metfrag.Rd
man/ruleSet-class.Rd
man/xsAnnotate-class.Rd
man/xsAnnotate.Rd
src/fastMatch.c
tests/runTests.R
vignettes/CAMERA.Rnw
vignettes/IsotopeDetectionVignette.Rnw
vignettes/compoundQuantilesVignette.Rnw
