View source: R/functions-xcmsEIC.R
plot.xcmsEIC | R Documentation |
Batch plot a list of extracted ion chromatograms to the current graphics device.
x |
the |
y |
optional |
groupidx |
either character vector with names or integer vector with indicies of peak groups for which to plot EICs |
sampleidx |
either character vector with names or integer vector with indicies of samples for which to plot EICs |
rtrange |
a two column matrix with minimum and maximum retention times between which to return EIC data points if it has the same number of rows as the number groups in the
it may also be a single number specifying the time window around the peak for which to plot EIC data |
col |
color to use for plotting extracted ion chromatograms. if missing
and if it is the same length as the number groups in the |
legtext |
text to use for legend. if |
peakint |
logical, plot integrated peak area with darkened lines (requires
that |
sleep |
seconds to pause between plotting EICs |
... |
other graphical parameters |
A xcmsSet
object.
plot.xcmsEIC(x, y, groupidx = groupnames(x), sampleidx = sampnames(x), rtrange = x@rtrange,
col = rep(1, length(sampleidx)), legtext = NULL, peakint = TRUE, sleep = 0, ...)
Colin A. Smith, csmith@scripps.edu
xcmsEIC-class
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png
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pdf
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postscript
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