README.md

In sp2019-antibiotics/bacSplittR: Analysis of Antibiotic Resistance Data

bacSplittR

R package estimating ECOFF based on the Iterative Statistical Method

Overview

This package is designed to find the Epidemiological Cutoff Value, ECOFF, of pairings of bacteria and antibiotics. Its use is to split bacteria into a resistant and a sensitive group for each antibiotic. The algorithm implemented in the R package bacSplittR is an implementation for zone diameter data based on the Iterative Statistical Method introduced by Turnidge, Kahlmeter and Kronvall in 2006.

Installation

Install the package using devtools.

```{r, eval = FALSE}

install.packages("devtools")

devtools::install_github("sp2019-antibiotics/bacSplittR")

```

sp2019-antibiotics/bacSplittR documentation built on Nov. 5, 2019, 9:14 a.m.