checkFit: Check fit of nls estimate

In sp2019-antibiotics/bacSplittR: Analysis of Antibiotic Resistance Data

Description

Check fit of nls estimate

Usage

checkFit(M, fit, N)

Arguments

M	nls object (or NA)
fit	the method used to determine the best fit; options: "n_abs" (default), "Pmean", "Psd", "Pn", "sigma"
N	the actual (true) number of observations in the subset (numeric value)

Details

The parameter fit has the following options:

• n_abs: the absolute deviation of the estimated number of observations in the subset to N

• Pmean: the p-value of the parameter mean in the NLS model

• Psd: the p-value of the parameter sd in the NLS model

• Pn: the p-value of the parameter n in the NLS model

• sigma: a parameter of the nls-function, which is the square root of the estimated variance of the random error

Value

Returns a numeric value describing the fit, this should be minimized to choose a subset

See Also

estimateCutoff

sp2019-antibiotics/bacSplittR documentation built on Nov. 5, 2019, 9:14 a.m.