plot_emissions: Plot emission spectra as excited by specified laser.

In ssokolen/fluoroscripts: Scripts for Importing and Processing Spectrofluorometry Data

Description

Generates a ggplot2 with emission spectra generated by specified laser.

Usage

plot_emissions(wavelengths, excitations, emissions, proteins, lasers,
  channels = NA, palette = NA, size = 2, background.alpha = 0.1)

Arguments

wavelengths	A vector of wavelengths (nm).
excitations	A vector of excitation intensities.
emissions	A vector of emmision intensities.
proteins	A vector of protein labels that correspond to each measurement.
lasers	Vector of lasers exciting given proteins e.g. c(488, 642)
channels	Optional vector of channels to highlight e.g. c('530/30', '670LP').
palette	Name of colorbrewer palette for discrete scale (if NA, spectra are coloured by emission wavelength.
size	Line size for emission spectra.
background.alpha	Transparency value for channel highlight.

Value

ggplot2 plot object.

ssokolen/fluoroscripts documentation built on May 30, 2019, 8:43 a.m.